Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900113.1_cds_XP_016450135.1_44615
CDS Infomation

[gene=LOC107774988] [db_xref=GeneID:107774988] [protein=LOW QUALITY PROTEIN: germacrene C synthase-like] [exception=unclassified translation discrepancy] [protein_id=XP_016450135.1] [location=join(13474..13812,13967..14246,15027..15405,15511..15575,15578..15728,15855..15993,16132..16380,17348..17641)] [gbkey=CDS]
Sequence

ATGTACAAAAATTTAGATGTAAAACCTTTGTGGGGAGAGAAAACAGAAAGAAGGATGAGT
CAAGCAATGATTGCTTATCCCACCGGCTGGCATCACTTAGCAAATTCTCAATCGGCCATT
GGGGGATACAGTTTCTGTTCAGTTAAAAATACATACTCATTTTCACCTTTAGTCATGTGG
AGGGGAAGAGAGAGACATAGAATCAGAGATTATAAGGAGAAAAGGATGACTCATAAAATA
TTAGCAATGGATGCTTCTTTCTCTGATCATCGTCACGTGGCAAATTTTGAATCAACCGTT
TGGGGATATCATTTCCTCTCCTATACTTATCAACTTACAGAAATTAGAACCCAAGAAAAA
CTTGAACTTGATGAGTTAAAAGAAAAAGTCAGGAAGATGTTAGTAGAAACTCGTGACAAT
AGTACACAAAAACTTGTCCTGATTGACACAATCCAACGATTGGGAGTAGCATATCATTTT
CATAATGAGATCGAAACATCTATTCAAAACATCTTTGATGCGTCCCAACTGCAGACTGAG
AATAATATTGATGATAACCTTTACGTTGTCGCTCTTCGTTTCCGGCTTGTAAGACAACAA
GGCCATTACATGTCTTCAGATGTGTTCAAGCAATTCACTAATCATGATGGAGGATTCAAG
GAAGCCCTTAGTAATGATGTCCAAGGATTACTAAGTTTGTATGAAGCATCACATATGAGA
GTGCACGCGGAGGAGATTCTAGAAGAAGCTCTTACCTTTACCACTATTCATCTCGAGTCC
ATGGTCACAAACTTGAACAATTTTAACTCGCTTAAGGCTCAAGTTTCTGAAGCCTTAAGC
CAGCCTATTCGTAAAACCGTACCAAGGTTGGGGGCAAGGAAATACATATCCATTTATGAA
GACATTGATGCACACAACAAATTGCTTTTGAAATTCGCAAAATTGGATTTTAACGTGTTG
CAAAAGCTGCATCAAAGAGAGCTTAACGAGCTTACGAGATGGTGGAAAGATTTGGATTTT
GTGAACAAATATCCATATGCAAGAGACAGATTGGTTGAGTGTTTTTGGATATTAGGATTG
TATTATGAGCCTCAGTATAGTCGTGCGAGAAAAATGATAACAAAAATAATCAAGATCGAC
AGCATCCTTGATGACACTTTTGATGCTTATGCAACCCTTGATGAACTCGTGCCGTTCACT
GATGCGATACAGAGATGGGACATTAGTGCGATAGATTCCCTACAGCCATATTTGAGACCT
GCTTATCAAGCCCTTCTAGACGTTTACAGTGAAATGGAAGAAGTACTGGCCAAAGAATGT
AAATCCGACCGCGTATACTATGCAAAATATGAGATGAAAAAGTTGGTGAGAGCCTTTCTT
AAGGAAGCCCAATGGTTGGATGCTGGCTATACTCCAACTTGTGAGGAGTATACTAAGAAT
GCACTTGTAAGCTGTGGCTATATGATGTTAGCAACAACTTCCTTGGTCGGAATGGAGGAG
TTTATATCCAGAGAGACTTTTGAATGGATAATAAATAAGCCTTCGATAGTTCTGGCTGCG
TCAACAATTAGCAGAGCAATGGACGATATTGTTGGCCATGACGTTGAACAACAAAGAGGA
CATGTAGCTTCAATTATTGAATGCTACATGAAAGAATATGGAGCATCAAAGGAAGAGGCA
TACGTTAAGCTACAGAAGGAAATCAAGAATGCATGGAAAGTTATAAACAAGGAATTATTC
CTTCCTACTGAAGTACCAATGTTTGTCCTTGAACGAGTTATAAATTGTGCACGTGTGATG
GACACTCTGTATAAAGAGGGAGATGGATACACAAACTCCAAAGGCAATGTTAAAAACATG
ATTAACTTGTTACTGGTTGAACCTATCAAAATATGA

Peptide Sequence

PEP ID

XP_016450135.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: germacrene C synthase-like [Nicotiana tabacum]
Sequence

MYKNLDVKPLWGEKTERRMSQAMIAYPTGWHHLANSQSAIGGYSFCSVKNTYSFSPLVMW
RGRERHRIRDYKEKRMTHKILAMDASFSDHRHVANFESTVWGYHFLSYTYQLTEIRTQEK
LELDELKEKVRKMLVETRDNSTQKLVLIDTIQRLGVAYHFHNEIETSIQNIFDASQLQTE
NNIDDNLYVVALRFRLVRQQGHYMSSDVFKQFTNHDGGFKEALSNDVQGLLSLYEASHMR
VHAEEILEEALTFTTIHLESMVTNLNNFNSLKAQVSEALSQPIRKTVPRLGARKYISIYE
DIDAHNKLLLKFAKLDFNVLQKLHQRELNELTRWWKDLDFVNKYPYARDRLVECYXWILG
LYYEPQYSRARKMITKIIKIDSILDDTFDAYATLDELVPFTDAIQRWDISAIDSLQPYLR
PAYQALLDVYSEMEEVLAKECKSDRVYYAKYEMKKLVRAFLKEAQWLDAGYTPTCEEYTK
NALVSCGYMMLATTSLVGMEEFISRETFEWIINKPSIVLAASTISRAMDDIVGHDVEQQR
GHVASIIECYMKEYGASKEEAYVKLQKEIKNAWKVINKELFLPTEVPMFVLERVINCARV
MDTLYKEGDGYTNSKGNVKNMINLLLVEPIKI

Transcript Sequence

Gene sequence data has not been registered.